Indel
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InSNP v.1.0
InSNP is a Windows program that detects substitution and indel SNPs in sequencing traces. It uses simple algorithms to detect the mutations and presents the sequences in compact visualizations that let you quickly decide which ones are real.
SeqState v.1.4.1
Analyze fasta file with this application. SeqState offer you a primer design, sequence statistics, and indel coding according to various schemes.Requirements: *
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Bambino v.1.0
View BAM files with this tool. Bambino offer users a graphical viewer and SNP/indel detector for next-generation sequencing files in SAM/BAM format. The viewer post-processes unpadded BAM alignments to create a fully-padded view of the assembly,
Bowtie v.0.12.8
A DNA sequences analyzer for you to use, an ultrafast memory-efficient short read aligner. Bowtie is an ultrafast, memory-efficient short read aligner geared toward quickly aligning large sets of short DNA sequences (reads) to large genomes.
ZOOM Lite for Linux v.1.5.20100518
ZOOM Lite is a next generation sequencing data mapping and visualization software.
ZOOM Lite for Windows v.1.5.20100518
ZOOM Lite is a next generation sequencing data mapping and visualization software.